miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|77282119|gb|CJ449844.1|CJ449844 AAGATTCCTCGACACTGTTGGCCTACTGGAAATGGTTATTGAAGACATGGCGTTGCTGGTGCGAGTCCTTAGGAACCAGA
CTAGCATTTCCCAGTGGGTTCCAGTATGCAGCCGATTGATACCTGTGTCTTCTACCCAAGTACAGGGTGGCAGGGCTCTG
TCTGGCACTTCCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCACTTCGGCCTCCCAAAGTGCTGGAATTAC
AGGCATGAGCCATCACCCCTGGACTTGTTTCTGTGATTTTGACTACTTTAGGATACTTCATTGGCCCCAGATGAGCCAGT
CCCGAGTATGTGGATCAGAACAGATTCCTGGAATAGACATACAGCTGAATAGGAAGTATCACGCCACACATAAGCTTTCT
ACTACCAAAGGTTCCCCACAGCCTGTTGAGGAGAAGGTTGGTGCTTTCACAAAGATAATAGAAGCCATGGGATTCACAGG
ACCTTTGAAATACAGTAAATGGAAGATTAAGATTGCGGCCCTGCGCATGTATACTAGCTGTGTGGAGAAAACTGACTTCG
AGGAATTCTTTCTAAGGTGTCAGATGCCTGATACATTCAATTCATGGTTTCTTATAACCCTACTCCACGTCTGGATGTGT
CTAGTCCGAATGAACCAGGAAGGCCGGAGTGGGAAGTACATGTGTCGTATCATAGTTCATTTTATGTGGGAAGGATGTTC
ACCACCGCCGCAGAATTCTTGGGGGTTAATCCCTATTTACTTGAGAAAACATGATCCTTATGGACAATAATTTTTATTCA
ACGATCTTGGGAATGATTAG




Most similar to sp|Q9NVA1|UQCC_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex
           chaperone CBP3 homolog OS=Homo sapiens GN=UQCC PE=1 SV=3
          Length = 299

 Score =  327 bits (839), Expect(2) = 2e-92
 Identities = 171/223 (76%), Positives = 171/223 (76%), Gaps = 1/223 (0%)
 Frame = +2

Query: 47  MALLVRVLRNQTSISQWVPVCSRLIPVSSTQVQGGRALSGTSQAGLKLLTSSDPPTSASQ 226
           MALLVRVLRNQTSISQWVPVCSRLIPVS TQ QG RALS TSQ                 
Sbjct: 1   MALLVRVLRNQTSISQWVPVCSRLIPVSPTQGQGDRALSRTSQ----------------- 43

Query: 227 SAGITGMSHHPWTCFCDFDYFRILHWPQMSQSRVCG-SEQIPGIDIQLNRKYHATHKLST 403
                                    WPQMSQSR CG SEQIPGIDIQLNRKYH T KLST
Sbjct: 44  -------------------------WPQMSQSRACGGSEQIPGIDIQLNRKYHTTRKLST 78

Query: 404 TKGSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 583
           TK SPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ
Sbjct: 79  TKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 138

Query: 584 MPDTFNSWFLITLLHVWMCLVRMNQEGRSGKYMCRIIVHFMWE 712
           MPDTFNSWFLITLLHVWMCLVRM QEGRSGKYMCRIIVHFMWE
Sbjct: 139 MPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWE 181



 Score = 33.5 bits (75), Expect(2) = 2e-92
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 711 KDVHHRRRILGG*SLFT*ENMILMDNNFYSTILG 812
           +DV  R R++G       +NMILM N+FY+ ILG
Sbjct: 181 EDVQQRGRVMGVNPYILKKNMILMTNHFYAAILG 214


>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex
           chaperone CBP3 homolog OS=Mus musculus GN=Uqcc PE=2 SV=1
          Length = 295

 Score =  280 bits (717), Expect(2) = 7e-79
 Identities = 151/223 (67%), Positives = 156/223 (69%), Gaps = 1/223 (0%)
 Frame = +2

Query: 47  MALLVRVLRNQTSISQWVPVCSRLIPVSSTQVQGGRALSGTSQAGLKLLTSSDPPTSASQ 226
           MALLVRVLRNQTSISQWVPVCS+L+ VS TQ    R  S TSQ                 
Sbjct: 1   MALLVRVLRNQTSISQWVPVCSQLVSVSPTQ----RQWSSTSQ----------------- 39

Query: 227 SAGITGMSHHPWTCFCDFDYFRILHWPQMSQSRVC-GSEQIPGIDIQLNRKYHATHKLST 403
                                    W Q +QSRVC GSEQ  G D   NRKYH T KL T
Sbjct: 40  -------------------------WLQKNQSRVCLGSEQTVGADTAQNRKYHNTSKLLT 74

Query: 404 TKGSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 583
           T+  PQPVEEKVG FTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ
Sbjct: 75  TQDFPQPVEEKVGPFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 134

Query: 584 MPDTFNSWFLITLLHVWMCLVRMNQEGRSGKYMCRIIVHFMWE 712
           MPDTFNSWFLITLLHVWMCLVRM QEGR+GKYMCRIIVHFMWE
Sbjct: 135 MPDTFNSWFLITLLHVWMCLVRMKQEGRTGKYMCRIIVHFMWE 177



 Score = 35.4 bits (80), Expect(2) = 7e-79
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 711 KDVHHRRRILGG*SLFT*ENMILMDNNFYSTILG 812
           +DV  R R++G  S    +NM LM NNFY+ ILG
Sbjct: 177 EDVEQRGRVMGVNSYILKKNMALMTNNFYAAILG 210


>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex
           chaperone CBP3 homolog OS=Xenopus laevis GN=uqcc PE=2
           SV=1
          Length = 200

 Score =  152 bits (383), Expect = 4e-36
 Identities = 65/82 (79%), Positives = 73/82 (89%)
 Frame = +2

Query: 467 MGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLV 646
           MGFTGPLKY+KWKIKIAALRMYT CVE+ D++EFF +C +PDT NSWFL+T LHVWMCLV
Sbjct: 1   MGFTGPLKYNKWKIKIAALRMYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLV 60

Query: 647 RMNQEGRSGKYMCRIIVHFMWE 712
           RM QEGR+GKYMCR IVH MWE
Sbjct: 61  RMKQEGRAGKYMCRYIVHSMWE 82